Very experienced in using R for data analysis and machine learning. Also experienced in package developement in R and currently have 3 packages hosted on CRAN as well as multiple hosted on GitHub.
Python is the main language I use for bioimage analysis. I am very comfortable in using it to create a variety of tools for processing data that come together to form complex analysis pipelines.
Regularly use Nextflow to generate fast, scalable, portable and reproducible pipelines for various tasks. Developed my own complex analysis pipeline for single cell morphological profiling of digital pathology slides.
I have experience in basic dockerisation of Nextflow pipelines to keep them portable and reproducible across many platforms.
I use git on a daily basis for version control and I am very confident with all of the basic commands and using it for collaborative projects.